F1000Research
F1000Research
5 years ago

SNP-SNP interactions as risk factors for aggressive prostate cancer [version 1; referees: 2 approved]

Venkatesh Vaidyanathan, Vijay Naidu, Anower Jabed, Lynnette R. Ferguson, Nishi Karunasinghe, Radha Pallati, Gareth Marlow
Prostate cancer (PCa) is one of the most significant male health concerns worldwide. Single nucleotide polymorphisms (SNPs) are becoming increasingly strong candidate biomarkers for identifying susceptibility to PCa. We identified a number of SNPs reported in genome-wide association analyses (GWAS) as risk factors for aggressive PCa in various European populations, and then defined SNP-SNP interactions, using PLINK software, with nucleic acid samples from a New Zealand cohort. We used this approach to find a gene x environment marker for aggressive PCa, as although statistically gene x environment interactions can be adjusted for, it is highly impossible in practicality, and thus must be incorporated in the search for a reliable biomarker for PCa. We found two intronic SNPs statistically significantly interacting with each other as a risk for aggressive prostate cancer on being compared to healthy controls in a New Zealand population.

Publisher URL: https://f1000research.com/articles/6-621/v1

DOI: 10.12688/f1000research.11027.1

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