3 years ago

A posteriori metadata from automated provenance tracking: integration of AiiDA and TCOD

Saulius Gražulis, Nicola Marzari, Nicolas Mounet, Andrea Cepellotti, Giovanni Pizzi, Andrius Merkys


In order to make results of computational scientific research findable, accessible, interoperable and re-usable, it is necessary to decorate them with standardised metadata. However, there are a number of technical and practical challenges that make this process difficult to achieve in practice. Here the implementation of a protocol is presented to tag crystal structures with their computed properties, without the need of human intervention to curate the data. This protocol leverages the capabilities of AiiDA, an open-source platform to manage and automate scientific computational workflows, and the TCOD, an open-access database storing computed materials properties using a well-defined and exhaustive ontology. Based on these, the complete procedure to deposit computed data in the TCOD database is automated. All relevant metadata are extracted from the full provenance information that AiiDA tracks and stores automatically while managing the calculations. Such a protocol also enables reproducibility of scientific data in the field of computational materials science. As a proof of concept, the AiiDA–TCOD interface is used to deposit 170 theoretical structures together with their computed properties and their full provenance graphs, consisting in over 4600 AiiDA nodes.

Publisher URL: https://link.springer.com/article/10.1186/s13321-017-0242-y

DOI: 10.1186/s13321-017-0242-y

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