3 years ago

Functional annotation of chemical libraries across diverse biological processes

Functional annotation of chemical libraries across diverse biological processes
Scott W Simpkins, Charles Boone, Katsuhiko Shirahige, Hiroyuki Osada, Raamesh Deshpande, Grant W Brown, Eva DeRango-Adem, Mami Yoshimura, Nikko P Torres, Hamid Safizadeh, Marissa A LeBlanc, Karen Kubo, Minoru Yoshida, Yoko Yashiroda, Anastasia Baryshnikova, Reika Okamoto, Jolanda van Leeuwen, Chad L Myers, Justin Nelson, Kerry Andrusiak, Abraham A Gebre, Jacqueline M Barber, Sheena C Li, Yoshikazu Ohya, Michael Costanzo, Hiroyuki Hirano, Erin Wilson, Jeff S Piotrowski, Brenda Andrews, Hiroki Okada
Chemical-genetic approaches offer the potential for unbiased functional annotation of chemical libraries. Mutations can alter the response of cells in the presence of a compound, revealing chemical-genetic interactions that can elucidate a compound's mode of action. We developed a highly parallel, unbiased yeast chemical-genetic screening system involving three key components. First, in a drug-sensitive genetic background, we constructed an optimized diagnostic mutant collection that is predictive for all major yeast biological processes. Second, we implemented a multiplexed (768-plex) barcode-sequencing protocol, enabling the assembly of thousands of chemical-genetic profiles. Finally, based on comparison of the chemical-genetic profiles with a compendium of genome-wide genetic interaction profiles, we predicted compound functionality. Applying this high-throughput approach, we screened seven different compound libraries and annotated their functional diversity. We further validated biological process predictions, prioritized a diverse set of compounds, and identified compounds that appear to have dual modes of action.

Publisher URL: http://dx.doi.org/10.1038/nchembio.2436

DOI: 10.1038/nchembio.2436

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