5 years ago

Viewing RNA-seq data on the entire human genome [version 1; referees: 2 approved]

Bennett Upton, Eric M. Weitz, Lorena Pantano, Ben Busby, Jingzhi Zhu
RNA-Seq Viewer is a web application that enables users to visualize genome-wide expression data from NCBI’s Sequence Read Archive (SRA) and Gene Expression Omnibus (GEO) databases. The application prototype was created by a small team during a three-day hackathon facilitated by NCBI at Brandeis University. The backend data pipeline was developed and deployed on a shared AWS EC2 instance. Source code is available at https://github.com/NCBI-Hackathons/rnaseqview.

Publisher URL: https://f1000research.com/articles/6-596/v1

DOI: 10.12688/f1000research.9762.1

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