3 years ago

A novel strain of porcine deltacoronavirus in Vietnam

Van Tam Nguyen, Ngoc Thach Pham, Thi Thu Hang Vu, Van Phan Le, Ki-Sun Kim, Sok Song, Dong-Jun An, SeEun Choe, Gyu-Nam Park, Dinh Quyen Le, Byung-Hyun An

Abstract

Two porcine deltacoronavirus (PDCoV) strains (Binh21 and HaNoi6) were isolated from two pig farms in North Vietnam. Phylogenetic analysis of the complete genomes and the Spike and Membrane genes revealed that the two Vietnam PDCoVs belong to the same lineage as PDCoVs from Thailand and Laos; however, the N genes belonged to the same lineage as PDCoVs from the USA, Korea, China, and Hong Kong. The recombination detection program subsequently identified the major parent (S5011 strain) and minor parent (HKU15-44 strain) of the two Vietnam PDCoV strains (p < 0.01).

Publisher URL: https://link.springer.com/article/10.1007/s00705-017-3594-8

DOI: 10.1007/s00705-017-3594-8

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